Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • Carola Berger
    Junior Member
    • Jun 2014
    • 8

    a50 package does not find executable

    Dear all,

    I am still pretty new to Unix operating system.

    I want to use your a50 package, to visualize some results of my Velvet assembly.

    I installed it via the

    cabal update
    cabal install a50

    commands. it also seemed that the installation was successful. But when I try to run it it gives me this error:

    a50: Couldn't find the 'gnuplot' executable - aborting


    I googled a lot, to find out what the problem is, but I can not. In the installation it did say that the executables were installed

    I than also reinstalled the package with

    sudo apt-get install ghc cabal-install
    cabal update
    cabal install a50

    But still I get the same message.

    Could anybody please help me? Maybe somebody had a similar problem? I would highly appreciate it.
  • Michael.Ante
    Senior Member
    • Oct 2011
    • 127

    #2
    Maybe your gnuplot is missing.
    Try in the command line 'which gnuplot' to locate it. If you couldn't find it, install it.
    Otherwise, add the location to your PATH.

    Comment

    • Carola Berger
      Junior Member
      • Jun 2014
      • 8

      #3
      I got it!

      THX!

      For people who might run into the same problem: I tried to install gnuplot also via

      cabal install gnuplot

      , but this did not fix the problem. but if I install it via

      sudo appt -get install gnuplot

      it worked

      Comment

      Latest Articles

      Collapse

      • GATTACAT
        Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
        by GATTACAT
        Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
        07-01-2026, 11:43 AM
      • SEQadmin2
        Nine Things a Sample Prep Scientist Thinks About Before Sequencing
        by SEQadmin2


        I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

        Here are nine questions we think about, in roughly the order they matter, before...
        06-18-2026, 07:11 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 07-02-2026, 11:08 AM
      0 responses
      19 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-30-2026, 05:37 AM
      0 responses
      20 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-26-2026, 11:10 AM
      0 responses
      21 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-17-2026, 06:09 AM
      0 responses
      54 views
      0 reactions
      Last Post SEQadmin2  
      Working...