eland2maq

[genepool_bee]

Dear next-gen sequencing bioinformaticians,

I have been trying to convert ELAND output to maq's map format. But unfortunately, its giving me error like:

maq: eland2maq.cc:27: hash_map_char<bit32_t>* read_list(FILE*): Assertion `!hash->find(p, &x)' failed.
Aborted

Have anyone come across this error before (and have solved it)?

Any response much appreciated.

Thanks in advance.

Urmi

[zee]

I have not seen this error before when using eland2maq. Perhaps you could try putting the minimum amount of information required in the eland report to do the conversion.
I use the latest version of maq and the novo2maq utility because I switched from ELAND to MAQ + novoalign.
There are some related threads discussing conversion to the MAQ .map format.