I recently re-install ubuntu and am getting a path error, but things seem like they are added.
What am I doing wrong? Thank you .
Code:
cmccabe@HPZ640:~$ echo $PATH /home/cmccabe/Desktop/ngs_analysis/samtools-1.2/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games cmccabe@HPZ640:~$ cd "/home/cmccabe/Desktop/NGS" cmccabe@HPZ640:~/Desktop/NGS$ samtools view -H /media/cmccabe/C2F8EFBFF8EFAFB9/pool_I_090215/IonXpress_008_150902.bam | sed '/^@PG/d' | samtools reheader - /media/cmccabe/C2F8EFBFF8EFAFB9/pool_I_090215/IonXpress_008_150902.bam > /home/cmccabe/Desktop/NGS/pool_I_090215/IonXpress_008_150902_newheader.bam The program 'samtools' is currently not installed. You can install it by typing: The program 'samtools' is currently not installed. You can install it by typing: sudo apt-get install samtools sudo apt-get install samtools
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