Hi,all
I am doing RNA-seq alignment with STAR, my workstation is dual core(E5-2620v3), 12 thread in total, 64G RAM. I am running 9 mouse RNA-seq sample data(1GB/sample), parallelly, two days has gone, still no result. No error, the log just say start mapping. Can any one with similar experience tell me how can I make it faster or is there anything wrong.
Below is my command:
/STAR-STAR_2.4.2a/bin/Linux_x86_64/STAR --outFilterIntronMotifs RemoveNoncanonicalUnannotated --runThreadN 2 --outTmpDir /pathdir/ --outSAMtype BAM SortedByCoordinate --genomeDir /pathfordatabaseformus/ --readFilesIn XXX.clean.fq.gz --readFilesCommand zcat
Thanks for all the guys who offer me help!
I am doing RNA-seq alignment with STAR, my workstation is dual core(E5-2620v3), 12 thread in total, 64G RAM. I am running 9 mouse RNA-seq sample data(1GB/sample), parallelly, two days has gone, still no result. No error, the log just say start mapping. Can any one with similar experience tell me how can I make it faster or is there anything wrong.
Below is my command:
/STAR-STAR_2.4.2a/bin/Linux_x86_64/STAR --outFilterIntronMotifs RemoveNoncanonicalUnannotated --runThreadN 2 --outTmpDir /pathdir/ --outSAMtype BAM SortedByCoordinate --genomeDir /pathfordatabaseformus/ --readFilesIn XXX.clean.fq.gz --readFilesCommand zcat
Thanks for all the guys who offer me help!
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