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Source of control human/mouse RNA from blood
I'm trying to source total RNA from human or mouse blood. Does anyone know a source or has a lab that's willing to make some?
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mRNA signature by cell-type
I'm new to this forum, and rather ignorant of sequencing and biology. I'm a mathematician by training, now working with biologists and computer scientists....
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mouse or non-human cancer sequence download
Hi everyone,
I am asking for help,I need mouse or non -human cancer sequences to verify my SV detection tools,but I do not know where to download...
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Computing time evaluate
Hi,all
I am doing RNA-seq alignment with STAR, my workstation is dual core(E5-2620v3), 12 thread in total, 64G RAM. I am running 9 mouse...
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Control-FREEC: mouse WES data, with control
Hi,
I am using control-FREEC to analyze a few mouse WES samples to get the CNVs.
I went through the manual and created config...
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Looking for Mouse and Human Neuron RNA seq. data
Hello All,
Can somebody point to raw Transcriptome sequence data for mouse and Human neuron? I wish to assemble that using TopHat.
Than...
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mouse mm9 miRNA in gtf format
Hi,
Where can i find mouse miRNA mm9 reference data in gtf format?
I know mirbase but i could only found these in gff format.
I would...
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Problem with FASTQC on Trinity Mouse DC reads example dataset
Dear SEQanswers,
My name is Alex SMITH and I've recently started a RNA-seq bioinformatics post-doc at the Malaghan Institute of...
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Driver mutations from mouse tumor WGS data?
Hello!
I am trying to identify driver mutations from mouse tumor WGS data. I have a list of 1200 SNPs and small indels from an alignment...
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Absence or incomplete ligation for SOLID lib prep.
Hello all,
I'm making fragment librairies on a Solid 5500XL, using LifeTech protocols and standard kits) and i am experiencing troubles...
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Finding orthologous sequence in human
Hi, all,
I have a bunch of mouse sequences and would like to find the orthologous human sequences. How to do this?
I found this...
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Number of variants from mouse exome looks very small
Hello everybody,
I’m just starting to analyze mouse exome. I got mouse exome fastq files (SRR519332) looks like Agilent SureSelect mouse...