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  • ninino
    Junior Member
    • Jul 2010
    • 1

    File conversion on CisGenome

    Hi,

    I am a newcomer to the HTS field and would like to analyze some ChIP-seq experiments using CisGenome with a GUI on a Windows OS. I got stuck at the beginning, when I tried to convert my BED files to the ALN format required by the program. There is a file conversion tool provided by the program, but this didn't work, even if I installed the software exactly as explained in the program tutorial. Did anybody get the same problem and has suggestions for me?

    Thanks,
  • litd
    Member
    • Mar 2010
    • 14

    #2
    the problem is the alignment format. cisgenome only works for the old format of eland result, not the sorted etc ones. please paste a part of alignment file here.

    Comment

    • litd
      Member
      • Mar 2010
      • 14

      #3
      or you can use commands to convert the file.

      Comment

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