Genome In A Bottle allele freqiencies

NoaHenig

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Join Date: Sep 2015

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Genome In A Bottle allele freqiencies

09-21-2015, 01:09 PM

Hi,
I downloaded the recent vcf file of NA12878 from the link below and would like to compare the allele frequencies of the published variants with frequencies of variants I found in my dataset. The published files does not contain "AF" or allele frequencies. I searched other versions of vcf as well and also in 1000Genomes web site.
Did anyone find this useful information?
Thanks
Noa

This is the link I used:
ftp://ftp-trace.ncbi.nih.gov/giab/ft..._HG001/latest/
Tags: 1000genomes, genome in a bottle, giab

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