Not sure what this error is. Would the bed file being used cause this? Thank you
Bed file
Code:
cmccabe@DTV-A5211QLM:~/Desktop/NGS$ coverageBed -hist -d -abam /home/cmccabe/Desktop/NGS/pool_I_090215/IonXpress_008_150902_newheader.bam -b /home/cmccabe/Desktop/NGS/bed/sorted_unix_5column_xgen_targets.bed > /home/cmccabe/Desktop/NGS/pool_I_090215/output.bam.hist.txt ***** ERROR: -counts, -d, -mean, and -hist are all mutually exclusive options. *
Code:
chr1 955542 955763 + AGRN:exon.1 chr1 957570 957852 + AGRN:exon.2 chr1 976034 976270 + AGRN:exon.2;AGRN:exon.3;AGRN:exon.4
Comment