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  • elisacarli
    Junior Member
    • Sep 2015
    • 2
    #1

    Best assembly

    I've run QUAST to assess the quality of a genome assembled with 3 different tools (Abyss, Velvet,SoapDeNovo) see Attachment.
    According to you which is the best?
    Why contigs in the last genome (SoapDeNovo) are 513 and in the other genomes 225/228?



    Kind regards
    Attached Files
    Tags: None
  • luc
    Senior Member
    • Dec 2010
    • 469
    #2
    Likely SOAP did not do any scaffolding so far (there are no Ns in the assembly) ?

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