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  • shum1
    Member
    • Apr 2010
    • 11
    #1

    Softwares for SNP ranking

    Dear All,
    I need your guidance in ranking the SNPs found as a result of SOLiD sequencing.What softwares should I use????
    Tags: None
    • Jose Blanca
      Member
      • Aug 2009
      • 70
      #2
      In which kind of raking are you interested? It might be quite different depending on your problem.
      I have developed I series of filters useful for plant breeders, could they interest you?

        Comment

        • shum1
          Member
          • Apr 2010
          • 11
          #3
          I am working on chicken genome and want to find the deleterious SNPs using some software.

            Comment

            • Jose Blanca
              Member
              • Aug 2009
              • 70
              #4
              I have not yet implemented anything to tag the deletereous SNPs, but maybe the rest of our pipeline could be of some use to you. You can take a look at the documentation and at least take some ideas. The address is:

              http://bioinf.comav.upv.es/ngs_backbone/

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