Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • capricy
    Senior Member
    • Apr 2012
    • 125

    #1

    looking detailed manual for seq_crumbs

    Hello, there,

    I am trying to use the tools in seq_crumbs, but couldn't find the information about the input output and argument setting.

    Could anybody help me to figure out where to get it?

    Thanks a lot!
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    You may have tried this already. Usual "program name -h/--help" may generate some on-screen help with well written programs. Worth a try.

    Comment

    • capricy
      Senior Member
      • Apr 2012
      • 125

      #3
      I have tried this, but it didn't work...

      Comment

      • beacamara
        Junior Member
        • May 2015
        • 3

        #4
        Hello,
        Seq_crumbs is a collection os small ngs file processing utilities. If you want to know specific information in relation to one of these file processing utilities, you just have to write program name --help/-h, as GenoMax said.
        Here you can find the list of these file processing utilities: https://github.com/JoseBlanca/seq_cr...ter/README.rst

        For instance:
        filter_by_length -h

        and you will show all the possible arguments

        Comment

        Latest Articles

        Collapse

        • SEQadmin2
          Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
          by SEQadmin2



          Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

          Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
          ...
          10-14-2026, 09:55 AM
        • SEQadmin2
          New Genomics Technologies Take Aim at Long-Standing Limits
          by SEQadmin2


          Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

          We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
          ...
          09-28-2026, 10:25 AM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by SEQadmin2, Yesterday, 11:13 AM
        0 responses
        17 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, Yesterday, 10:48 AM
        0 responses
        18 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 10-15-2026, 10:52 AM
        0 responses
        36 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 10-14-2026, 05:39 AM
        0 responses
        42 views
        0 reactions
        Last Post SEQadmin2  
        Working...