Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • Pol8
    Member
    • Aug 2014
    • 33

    #1

    split blast output based on evalues interval

    Hi,

    how can I split a blast ouput (outfmt 6) based on numeric range of evalues? Let's say I want to split it into two files: one with all the queries with evalues between 0 and 0.1, and the other with the queries with evalue between 0.2 and 0.3.
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    Originally posted by Pol8 View Post
    Hi,

    how can I split a blast ouput (outfmt 6) based on numeric range of evalues? Let's say I want to split it into two files: one with all the queries with evalues between 0 and 0.1, and the other with the queries with evalue between 0.2 and 0.3.
    See if this does it

    Code:
    $ awk '$11 > 0 && $11 < 0.1' blast_result > eval_bet_0_01
    $ awk '$11 > 0.2 && $11 < 0.3' blast_result > eval_bet_02_03

    Comment

    Latest Articles

    Collapse

    • kinpict.com
      Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
      by kinpict.com
      The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
      Today, 06:37 PM
    • SEQadmin2
      16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
      by SEQadmin2





      NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
      10-30-2026, 06:46 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, 11-12-2026, 07:59 AM
    0 responses
    27 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 11-05-2026, 09:25 AM
    0 responses
    35 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 11-03-2026, 11:54 AM
    2 responses
    56 views
    0 reactions
    Last Post kinpict.com  
    Started by SEQadmin2, 10-28-2026, 09:57 AM
    0 responses
    175 views
    0 reactions
    Last Post SEQadmin2  
    Working...