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  • split blast output based on evalues interval

    Hi,

    how can I split a blast ouput (outfmt 6) based on numeric range of evalues? Let's say I want to split it into two files: one with all the queries with evalues between 0 and 0.1, and the other with the queries with evalue between 0.2 and 0.3.

  • #2
    Originally posted by Pol8 View Post
    Hi,

    how can I split a blast ouput (outfmt 6) based on numeric range of evalues? Let's say I want to split it into two files: one with all the queries with evalues between 0 and 0.1, and the other with the queries with evalue between 0.2 and 0.3.
    See if this does it

    Code:
    $ awk '$11 > 0 && $11 < 0.1' blast_result > eval_bet_0_01
    $ awk '$11 > 0.2 && $11 < 0.3' blast_result > eval_bet_02_03

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