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Hi,
We at Strand Life Sciences are currently working on an application for the analysis of ChIP-SEQ, RNA-SEQ and DNA Variation data and we are looking for BETA TESTERS!
The application starts with pre-aligned NGS data (in SAM/BAM format) and is built on the same platform as Agilent GeneSpring (and can be fully integrated with GeneSpring) and allows for the following analysis
ChIP-SEQ
RNA-SEQ
The RNA-SEQ experiment type allows for the measurement of expression levels of known transcripts and the detection of novel genes. It supports alternative splicing analysis as well as statistical analysis of differentially expressed genes.
DNA Variant analysis
The DNA Variant analysis experiment type allows for the detection of SNPs, MNPs, large and small InDels and large structural variants, such as translocations and inversions etc. Annotation of the found variants with previously published variants from dbSNPs as well as the analysis of the effect of the variants on the coding regions of the genes, such as frameshifts, insertions/deletions, etc.
Let me know if you are interested in BETA testing and once we release this product, we give you 6 months free access!
Sincerely yours,
Thon de Boer
Dir. of Product Manager
Strand Life Sciences
We at Strand Life Sciences are currently working on an application for the analysis of ChIP-SEQ, RNA-SEQ and DNA Variation data and we are looking for BETA TESTERS!
The application starts with pre-aligned NGS data (in SAM/BAM format) and is built on the same platform as Agilent GeneSpring (and can be fully integrated with GeneSpring) and allows for the following analysis
ChIP-SEQ
- Import of SAM/BAM file of aligned data
- The detection of peaks in the coverage by two algorithms
- PICS
- MACS
- Motif detection using the GADEM algorithm
- Detection of up- and downstream genes
- GO and Pathway analysis of the affected genes
RNA-SEQ
The RNA-SEQ experiment type allows for the measurement of expression levels of known transcripts and the detection of novel genes. It supports alternative splicing analysis as well as statistical analysis of differentially expressed genes.
DNA Variant analysis
The DNA Variant analysis experiment type allows for the detection of SNPs, MNPs, large and small InDels and large structural variants, such as translocations and inversions etc. Annotation of the found variants with previously published variants from dbSNPs as well as the analysis of the effect of the variants on the coding regions of the genes, such as frameshifts, insertions/deletions, etc.
Let me know if you are interested in BETA testing and once we release this product, we give you 6 months free access!
Sincerely yours,
Thon de Boer
Dir. of Product Manager
Strand Life Sciences
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