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  • aleferna
    Senior Member
    • Sep 2009
    • 121

    #1

    Bwa aln

    Does the short read aligner in BWA (bwa aln) require reads with the exact same length like MAQ or can it be a mixture 20bp, 24bp, 30bp?
  • robs
    Senior Member
    • May 2010
    • 116

    #2
    Can be mixed lengths reads.

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