GLFv3 format

[rjjwind]

I generate genotype likelihood in the binary GLFv3 format,and then I used the commond "glfview" generate the file that is decimal ,the question is what the format of this file?
eg:
chr10 50071 T 1 22 0 22 22 22 3 22 22 3 22 3 0
chr10 50072 T 1 22 0 22 22 22 3 22 22 3 22 3 0
chr10 50073 G 1 22 0 22 22 3 22 22 3 22 0 3 22
chr10 50074 G 1 22 0 22 22 3 22 22 3 22 0 3 22
chr10 50075 T 1 22 0 22 22 22 3 22 22 3 22 3 0

which dose each column mean?

[rjjwind]

question about samtools

I used " samtools pileup -f -g"generate genotype likelihood in the binary GLFv3 format,and then I used the commond "glfview" generate the file that is decimal ,the question is what the format of this file?
eg:
chr10 50071 T 1 22 0 22 22 22 3 22 22 3 22 3 0
chr10 50072 T 1 22 0 22 22 22 3 22 22 3 22 3 0
chr10 50073 G 1 22 0 22 22 3 22 22 3 22 0 3 22
chr10 50074 G 1 22 0 22 22 3 22 22 3 22 0 3 22
chr10 50075 T 1 22 0 22 22 22 3 22 22 3 22 3 0

which dose each column mean?

[nilshomer]

Please do not post multiple threads with the same question. I have deleted your other thread.

[albrechtstein]

the last 10 columns are the phred scaled likelihood ratio (The documentation of the file format is not correct).
It is the same format as is explained here:
http://maq.sourceforge.net/glfProgs.shtml