I am new to Illumina data with more experience with Ion Torrent data. Recently, I have some fastq files and before:
CoverageBed using a bam:
Now that I have 2 paired-end fastq files:
S5_R1.fastq
S5_R2.fastq
How do I use them with coverageBed? Thank you .
CoverageBed using a bam:
Code:
coverageBed -d -a targets.bed -b IonXpress_.bam > IonXpress_output.txt
Now that I have 2 paired-end fastq files:
S5_R1.fastq
S5_R2.fastq
How do I use them with coverageBed? Thank you .
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