Cufflinks, attribute not supported

[Anna Esteve]

Hi,
I run Cufflinks with sam input (from Tophat) and I got this error message thousands of times:
'NH attribute not supported'
Does anyone know how to solve this problem?
Thanks in advance.

[sdriscoll]

Is Cufflinks still generating output along with these errors or are you only getting errors? I've seen some errors from Cufflinks in the past but it didn't get in the way of it generating otherwise normal looking output. It sounds like something in the SAM file that Cufflinks doesn't like though that doesn't make much sense.

[Anna Esteve]

Cufflinks reports that doesn't support NH, CC and CP attributes. So I had to delete all this attributes from my Sam file and now I think is working fine.