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  • Anna Esteve
    Junior Member
    • Jan 2010
    • 7
    #1

    Cufflinks, attribute not supported

    Hi,
    I run Cufflinks with sam input (from Tophat) and I got this error message thousands of times:
    'NH attribute not supported'
    Does anyone know how to solve this problem?
    Thanks in advance.
    Tags: None
  • sdriscoll
    I like code
    • Sep 2009
    • 436
    #2
    Is Cufflinks still generating output along with these errors or are you only getting errors? I've seen some errors from Cufflinks in the past but it didn't get in the way of it generating otherwise normal looking output. It sounds like something in the SAM file that Cufflinks doesn't like though that doesn't make much sense.
    /* Shawn Driscoll, Gene Expression Laboratory, Pfaff
    Salk Institute for Biological Studies, La Jolla, CA, USA */

    Comment

    • Anna Esteve
      Junior Member
      • Jan 2010
      • 7
      #3
      Cufflinks reports that doesn't support NH, CC and CP attributes. So I had to delete all this attributes from my Sam file and now I think is working fine.

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