contigs alignment to long reads

[mido1951]

Hello,
I have contigs generated by an assembler and I have long reads DNA.
I want to make a contig alignment with long reads, I want to develop an alignment program.
Before doing that, I need to know conernant contigs.
do I have to consider their orientation? or I can used on the long reads without problems?
thanks

[mido1951]

any response?

[Brian Bushnell]

Mido, you keep asking the same questions in multiple threads (both here and on Biostar) and generally ignore or disregard the helpful responses people post. As a result, people have started to ignore you. Please stop creating new threads. Go back and read all of the responses people have posted, and actually try what they suggest.