I am looking for a script that can produce an interleaved fastq file and a file of orphaned [single end] reads from two input fastq files. The two read pairs have been quality filtered using fastx-toolkit 'fastq_quality_filter', which breaks the exact pairing that previously existed.
Has anyone come across a script to do this rather than just to interleave to perfectly paired sets of fastq files?
This is a cross-post (apologies) but I wasn't sure where it fitted best.
Has anyone come across a script to do this rather than just to interleave to perfectly paired sets of fastq files?
This is a cross-post (apologies) but I wasn't sure where it fitted best.
Comment