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  • cmccabe
    Senior Member
    • Jul 2012
    • 355
    #1

    bowtie2 index on igenomes

    The hg19.3.bt2 index reference from iGenomes is only 4kb where as the other 5 .bt2 are 600-915MB. Is this right or should I re-download again? Thank you .

    ftp://ftp.ccb.jhu.edu/pub/data/bowtie2_indexes/hg19.zip
    total size of zip 3.2GB
    Tags: None
    • GenoMax
      Senior Member
      • Feb 2008
      • 7142
      #2
      Why are you worried about the file size? If all the files are not right bowtie2 should complain.

      BTW: That file is about that size in the HG19_UCSC version from iGenomes that I use.

        Comment

        • cmccabe
          Senior Member
          • Jul 2012
          • 355
          #3
          Thank you .

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