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  • Announcing: BioDSL - Bioinformatics Domain Specific Language

    BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows. A workflow may consist of several pipelines and each pipeline consists of a series of steps such as reading in data from a file, processing the data in some way, and writing data to a new file.

    BioDSL is build on the same principles as Biopieces, where data records are passed through multiple commands each with a specific task. The idea is that a command will process the data record if this contains the relevant attributes that the command can process. E.g. if a data record contains a sequence, then the command reverse_seq will reverse that sequence.

Latest Articles

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  • seqadmin
    Strategies for Sequencing Challenging Samples
    by seqadmin


    Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
    03-22-2024, 06:39 AM
  • seqadmin
    Techniques and Challenges in Conservation Genomics
    by seqadmin



    The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

    Avian Conservation
    Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
    03-08-2024, 10:41 AM

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