I have a dataset with miRNA counts from cancer patients and their survival times and outcomes.
Is it correct use DESeq2 (or any other similar tool) to find miRNAs that affect survival?
I figured I could use a survival object in the design formula.
The resulting DE miRNAs are seem to affect survival outcomes. However, I'm not sure if this method makes sense. If it doesn't, feel free to suggest a better approach. Thanks!
Is it correct use DESeq2 (or any other similar tool) to find miRNAs that affect survival?
I figured I could use a survival object in the design formula.
Code:
design=~Surv(survival_time, outcome)