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Hi,
relative Bioinformatics-noob here.
After a hint from a friend, I recently started using SeqMonk to analyse Ribosomal Profiling Data from E. coli. Works beautifully.
Only thing is that I am looking to find Codon/Aminoacid-specific effects, and I am yet to find a possiblity how to look at those sequences in SeqMonk. I thought about exporting the data, but since that only gives .txt, I would have to copy paste all the loci into another programme that does display the sequences (as in my case, IGV), which I rather not since I would be looking at >500 loci.
Does anyone have any advice for me? Like how I could transform the .txt to .bai, if that's possible. Or is there no way around copy pasting?
Thanks a lot!
relative Bioinformatics-noob here.
After a hint from a friend, I recently started using SeqMonk to analyse Ribosomal Profiling Data from E. coli. Works beautifully.
Only thing is that I am looking to find Codon/Aminoacid-specific effects, and I am yet to find a possiblity how to look at those sequences in SeqMonk. I thought about exporting the data, but since that only gives .txt, I would have to copy paste all the loci into another programme that does display the sequences (as in my case, IGV), which I rather not since I would be looking at >500 loci.
Does anyone have any advice for me? Like how I could transform the .txt to .bai, if that's possible. Or is there no way around copy pasting?
Thanks a lot!