about uniprot sprot.fasta header

[kurban910]

hey guys,
i wanna ask a question about uniprot fasta file header.

in the header shown as below:

kurban@kurban-X550VC:~/Desktop/Uniprot$ zcat uniprot_sprot.fasta.gz | more
[COLOR="Blue"]>sp|Q6GZX4|001R_FRG3G Putative transcription factor 001R OS=Frog virus 3 (isolate Goorha) GN=FV3-001R PE=4 SV=1[/COLOR]
MAFSAEDVLKEYDRRRRMEALLLSLYYPNDRKLLDYKEWSPPRVQVECPKAPVEWNNPPS
EKGLIVGHFSGIKYKGEKAQASEVDVNKMCCWVSKFKDAMRRYQGIQTCKIPGKVLSDLD
AKIKAYNLTVEGVEGFVRYSRVTKQHVAAFLKELRHSKQYENVNLIHYILTDKRVDIQHL
EKDLVKDFKALVESAHRMRQGHMINVKYILYQLLKKHGHGPDGPDILTVKTGSKGVLYDD
SFRKIYTDLGWKFTPL

kurban@kurban-X550VC:~/Desktop/Uniprot$ zcat uniprot_trembl.fasta.gz | more
[COLOR="Blue"]>tr|G9CT51|G9CT51_9ARCH Ammonia monooxygenase (Fragment) OS=uncultured ammonia-oxidizing archaeon GN=amoA PE=4 SV=1[/COLOR]
CTHYLFIVVVAVNSTLLTINAGDYIFYTDWAWTSFTVFSISQTLMLIVGACYYLTFTGVP
GTATYYALIMTVYTWVAKAAWFSLGYPYDFIVTPVWLPSAMLLDLVYWATKKNKHSLILF
GGVLVGMSLPLFNMVNLITVADPLETAFKYPRPTLPPYMTPIEPQVGKFYNSPVALGAGA
GAVLGCTFAALGCKLNT

which ones are UniProt IDs and which ones are Uniprot accession numbers?

[mastal]

see http://www.uniprot.org/help/differen...sion_entryname

The first set of identifiers (Q6GZX4, G9CT51) are the accession numbers.

[kurban910]

thanks you @mastal.

[Mat29]

How to Run BBmap for many .fastaq files?

#!/bin/bash
./bbmap.sh ref=ref.fa # creating index file from the input reference
for i in {ls*.fastq}
do
./bbmap.sh in=i out={.}
done


I also tried using GNU parallel ls *.sra | xargs -I {} -P 5 -n 1 ./fastq-dump {}| ./bbmap.sh in=ls *.fastq out=mapped.sam

(sra part works, bbmap not)
what to change in code?