I recently built the old GAPipeline v1.5 software for MacOS. I'm now trying to build Illumina's newer OLB 1.6.0 for MacOS [10.6] and I'm looking for anyone who has had success in doing so.
So far I have installed the following packages:
* fftw (float enabled) (from source)
* gnuplot (from macports)
* imagemagick (from macports)
* p5-xml-simple [XML::Simple] (from macports)
* doxygen (from macports)
In order for boost to build, I had to do the following: [MacOS 10.6 only]
* Untar opt/boost_1_37_0.tar.gz
* Edit line 25 of boost_1_37_0/tools/build/v2/tools/darwin.jam to be
10.6 10.5 10.4 10.3 10.2 10.1
* Retar and replace opt/boost_1_37_0.tar.gz with the modified version.
[In case anyone is going to site this as the problem, I get the same errors in 10.5]
I also edit c++/common/Sequence.hh to have the following line:
#include <sys/types.h>
After this, i run make and get the following output when compiling PairFileXmlSerialization.cpp:
Does anyone have any knowledge as to what these boost errors are all about? It compiles correctly on both Redhat and Ubuntu, but can't quite do it on MacOS.
Thank you. Any help or pointers will be much appreciated,
Carl
So far I have installed the following packages:
* fftw (float enabled) (from source)
* gnuplot (from macports)
* imagemagick (from macports)
* p5-xml-simple [XML::Simple] (from macports)
* doxygen (from macports)
In order for boost to build, I had to do the following: [MacOS 10.6 only]
* Untar opt/boost_1_37_0.tar.gz
* Edit line 25 of boost_1_37_0/tools/build/v2/tools/darwin.jam to be
10.6 10.5 10.4 10.3 10.2 10.1
* Retar and replace opt/boost_1_37_0.tar.gz with the modified version.
[In case anyone is going to site this as the problem, I get the same errors in 10.5]
I also edit c++/common/Sequence.hh to have the following line:
#include <sys/types.h>
After this, i run make and get the following output when compiling PairFileXmlSerialization.cpp:
[ 13%] Building CXX object c++/common/CMakeFiles/ga_common.dir/PairFileXmlSerialization.cpp.o
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp: In function ‘void ga::common::savePairXml(const ga::common::PairProperties&, const std::string&)’:
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:33: error: ‘assign’ is not a namespace-name
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:33: error: expected namespace-name before ‘;’ token
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2ManyAlignmentsFound]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2ManyAlignmentsFound’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2SingleAlignmentFound]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2SingleAlignmentFound’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1SingleAlignmentFound]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read1SingleAlignmentFound’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2NM]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2NM]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2NM’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1NM]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1NM]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read1NM’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2Repeat]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2Repeat]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2Repeat’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1Repeat]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1Repeat]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read1Repeat’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2ManyAlignmentsFound]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2ManyAlignmentsFound’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2SingleAlignmentFound]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2SingleAlignmentFound’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1SingleAlignmentFound]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read1SingleAlignmentFound’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2NM]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2NM]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2NM’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1NM]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1NM]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read1NM’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2Repeat]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2Repeat]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2Repeat’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1Repeat]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1Repeat]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read1Repeat’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/c++/common/PairProperties.hh: At global scope:
/Users/myuser/OLB-1.6.0/c++/common/PairProperties.hh: In instantiation of ‘void ga::common::Read1ManyAlignmentsFound::serialize(Archive&, unsigned int) [with Archive = boost::archive::xml_iarchive]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: instantiated from ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/c++/common/PairProperties.hh:498: warning: unused parameter ‘ar’
/Users/myuser/OLB-1.6.0/c++/common/PairProperties.hh: In instantiation of ‘void ga::common::Read1ManyAlignmentsFound::serialize(Archive&, unsigned int) [with Archive = boost::archive::xml_oarchive]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: instantiated from ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/c++/common/PairProperties.hh:498: warning: unused parameter ‘ar’
make[3]: *** [c++/common/CMakeFiles/ga_common.dir/PairFileXmlSerialization.cpp.o] Error 1
make[2]: *** [c++/common/CMakeFiles/ga_common.dir/all] Error 2
make[1]: *** [all] Error 2
make: *** [all] Error 2
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp: In function ‘void ga::common::savePairXml(const ga::common::PairProperties&, const std::string&)’:
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:33: error: ‘assign’ is not a namespace-name
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:33: error: expected namespace-name before ‘;’ token
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2ManyAlignmentsFound]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2ManyAlignmentsFound’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2SingleAlignmentFound]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2SingleAlignmentFound’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1SingleAlignmentFound]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read1SingleAlignmentFound’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2NM]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2NM]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2NM’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1NM]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1NM]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read1NM’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2Repeat]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read2Repeat]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2Repeat’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1Repeat]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1Repeat]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read1Repeat’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2ManyAlignmentsFound]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2ManyAlignmentsFound’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2SingleAlignmentFound]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2SingleAlignmentFound’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1SingleAlignmentFound]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1SingleAlignmentFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read1SingleAlignmentFound’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2NM]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2NM]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2NM’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1NM]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1NM]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1NM]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read1NM’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2Repeat]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read2Repeat]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read2Repeat’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp: In static member function ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1Repeat]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1Repeat]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1Repeat]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: error: ‘struct ga::common::Read1Repeat’ has no member named ‘serialize’
/Users/myuser/OLB-1.6.0/c++/common/PairProperties.hh: At global scope:
/Users/myuser/OLB-1.6.0/c++/common/PairProperties.hh: In instantiation of ‘void ga::common::Read1ManyAlignmentsFound::serialize(Archive&, unsigned int) [with Archive = boost::archive::xml_iarchive]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: instantiated from ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/iserializer.hpp:152: instantiated from ‘void boost::archive::detail::iserializer<Archive, T>::load_object_data(boost::archive::detail::basic_iarchive&, void*, unsigned int) const [with Archive = boost::archive::xml_iarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/c++/common/PairProperties.hh:498: warning: unused parameter ‘ar’
/Users/myuser/OLB-1.6.0/c++/common/PairProperties.hh: In instantiation of ‘void ga::common::Read1ManyAlignmentsFound::serialize(Archive&, unsigned int) [with Archive = boost::archive::xml_oarchive]’:
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/access.hpp:109: instantiated from ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:74: instantiated from ‘void boost::serialization::serialize(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/serialization/serialization.hpp:133: instantiated from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/opt/include/boost/archive/detail/oserializer.hpp:144: instantiated from ‘void boost::archive::detail:serializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ga::common::Read1ManyAlignmentsFound]’
/Users/myuser/OLB-1.6.0/c++/common/PairFileXmlSerialization.cpp:65: instantiated from here
/Users/myuser/OLB-1.6.0/c++/common/PairProperties.hh:498: warning: unused parameter ‘ar’
make[3]: *** [c++/common/CMakeFiles/ga_common.dir/PairFileXmlSerialization.cpp.o] Error 1
make[2]: *** [c++/common/CMakeFiles/ga_common.dir/all] Error 2
make[1]: *** [all] Error 2
make: *** [all] Error 2
Thank you. Any help or pointers will be much appreciated,
Carl
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