OMIM annotation

[BurgundiaPR]

Hi everybody,

I am interested by two fields from the OMIM data : « Phenotype » and « Inheritance », but I do not know how to extract them automatically in my pipeline. For the first field, I can use this site http://www.uniprot.org/docs/humsavar, but for the second ? ...

Thanks for your help,
BPR

[tristan dubos]

Hi
what is the type of file you got in result after OMIM ? Sorry i dont remember is it a tabular one ?

[BurgundiaPR]

Hi,

I precisely have no file with OMIM data. What I have planned is to extract information using a perl script and HTML::TableExtract, but i have some difficulty with this module.

May I ask anyone's help ?
For example, I would like to extract the Phenotype and Inheritance fields from :
http://omim.org/entry/612452

Thanks by advance,
BPR