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  • Mike.G
    Junior Member
    • Jan 2016
    • 1

    #1

    PINDEL: report parameters

    Hi,
    I'm trying to make PINDEL report only deletions without any other SV types.
    The manual says:
    -r/--report_inversions
    report inversions (default true)

    -t/--report_duplications
    report tandem duplications (default true)

    -l/--report_long_insertions
    report insertions of which the full sequence cannot be deduced because of their length (default true)

    -k/--report_breakpoints
    report breakpoints (default true)
    But I couldn't figure out how to switch these parameters. How should the command look exactly? I tried --report_inversions false; --report_inversions=false; --report_inversions=FALSE; --report_inversions 0. Nothing worked.
    Thank you!

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