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  • #1

    MEGAN - changing query coverage?

    Hello,

    Does anyone know if it is possible to change the parameters in MEGAN to only consider fragments with 100% query coverage?

    When attempting the change the LCA parameters I cannot find an option to do so. I understand that the bit-score takes into account query coverage, so does anyone know how to adjust the bit-score value to only consider sequences with high query coverage?

    Any help would be much appreciated!

    Thanks
    Tags: blast, megan, metagenomics, query coverage
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