Hi all,
I am doing some mRNA analysis, and I got some numbers for genome coverage (percentage of mapping genome and whole genome length), and the numbers are quite low. I have only one lane with ~92%, where as some others are ~50%, some lanes are quite low (~20%). Are those number normal? What number do people usually get? Will these numbers be different for different sequencing such as ChIP, RNA, mRNA etc...
Thanks,
D.
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