scripture trouble

memo

Junior Member

Join Date: Aug 2010

Posts: 2
- Share
- Tweet
#1

scripture trouble

08-13-2010, 04:29 AM

Hi!

I'm trying to use scripture to assemble RNAseq reads, and when preprocessing the data I use this command:

java -Xmx4000m -jar scripture.jar -task makePairedFile -pair1 spm31/good_hits.sorted.sam -pair2 spm32/good_hits.sorted.sam -out lane3.paired.sam -sorted

This gives me the message "Invalid task makePairedFile" in return.

Anyone here who has used scripture and knows what goes wrong?

Have a nice day!
Tags: None
adamdeluca

Member

Join Date: Jul 2010

Posts: 95
- Share
- Tweet
#2

08-13-2010, 05:20 AM

looks like you need the beta version for the makePairedFile task

Access Denied

http://www.broadinstitute.org/software/scripture/?q=download
Comment

Previous template Next

Reply to Proteomic Platforms: How to Choose the Right Analytical Strategy to Improve Detection and Clinical Applications

by mylaser

The world of online gaming has grown tremendously over the past few years, giving players access to exciting sports, casino games, and interactive entertainment from the comfort of their homes. Among the platforms gaining attention, Kheloyaar has become a trusted destination for users seeking a fast, secure, and engaging gaming experience.
Whether you're a first-time visitor or an existing user, understanding the features of Kheloyar and the Kheloyaar login process can help you enjoy everything...
- Channel: Articles
Today, 12:33 AM
Proteomic Platforms: How to Choose the Right Analytical Strategy to Improve Detection and Clinical Applications

by SEQadmin2

Proteomics platforms are evolving rapidly, with advances in mass spectrometry and affinity-based approaches expanding what researchers can detect and at what scale. As the field moves toward deeper proteome coverage and clinical applications, scientists face an increasingly complex landscape of tools. This article will explore how researchers are navigating these choices to find the right platform for their work.

The systematic characterization of the human proteome has...
- Channel: Articles
Yesterday, 11:48 AM
Advanced Sequencing Platforms Tackle Neuroscience’s Toughest Genomics Problems

by SEQadmin2

Genomics studies in neuroscience face a special challenge due to the brain’s complexity and scarcity of samples. Mapping changes in cell type and state using conventional next-generation sequencing methods remains challenging. Advances in technologies like single-cell sequencing, spatial transcriptomics, and long-read sequencing have opened the door to deeper studies of the brain and diseases like Alzheimer’s, amyotrophic lateral sclerosis (ALS), and schizophrenia.
...
- Channel: Articles
07-09-2026, 11:10 AM

Topics	Statistics	Last Post
Single-Cell Atlases Skew Toward European Ancestry, Analysis Finds by SEQadmin2 Started by SEQadmin2, Yesterday, 11:10 AM	0 responses 8 views 0 reactions	Last Post by SEQadmin2 Yesterday, 11:10 AM
UC San Diego Bioengineers Map Gene Function in Human Stem Cells by SEQadmin2 Started by SEQadmin2, 07-13-2026, 10:26 AM	0 responses 30 views 0 reactions	Last Post by SEQadmin2 07-13-2026, 10:26 AM
New Analysis Splits Leukemia Into 16 Epigenomic Subgroups by SEQadmin2 Started by SEQadmin2, 07-09-2026, 10:04 AM	0 responses 39 views 0 reactions	Last Post by SEQadmin2 07-09-2026, 10:04 AM
Genome-Wide CRISPR Screen Uncovers Unlikely Psoriasis Target by SEQadmin2 Started by SEQadmin2, 07-08-2026, 10:08 AM	0 responses 25 views 0 reactions	Last Post by SEQadmin2 07-08-2026, 10:08 AM

Unconfigured Ad

Comment

Latest Articles

ad_right_rmr

News