How to use MAQVIEW?

[sigusn]

Hi
You can upload your own genomes into the IGV. Just upload the exact same fasta file as you aligned to using MAQ.

[Lspoor]

Thanks, I'll have a go!

[Torst]

g++ -g -O2 -o maqview read_cache.o view_goto.o view_panel.o gl_gui.o MainFrame.o btree.o maqmap_index.o zrio.o stdhashc.o cns_cache.o const.o adler32.o compress.o crc32.o deflate.o gzio.o inffast.o inflate.o infback.o inftrees.o trees.o uncompr.o zutil.o -lGL -lglut -lm
view_panel.o: In function `resetPickMatrixs':
/usr/local/bin/maqview/view_panel.c:270: undefined reference to 'gluPickMatrix'

You probably don't have the "glut" libraries installed, or an old version of them. If you are on an RPM based system (Redhat/Suse/...) you may need to install the "mesa-libGLU-devel" package, or equivalent.

[Lspoor]

I have freeglut3-dev and assoc packages installed on the newest version of Ubuntu? Not sure if I need to try another type of GLUT-dev package?

[nshrine]

Iam also getting the following error when typing in the "make" command as the last step to install the latest version of MAQVIEW, does anyone know what it means?

g++ -g -O2 -o maqview read_cache.o view_goto.o view_panel.o gl_gui.o MainFrame.o btree.o maqmap_index.o zrio.o stdhashc.o cns_cache.o const.o adler32.o compress.o crc32.o deflate.o gzio.o inffast.o inflate.o infback.o inftrees.o trees.o uncompr.o zutil.o -lGL -lglut -lm
view_panel.o: In function `resetPickMatrixs':
/usr/local/bin/maqview/view_panel.c:270: undefined reference to `gluPickMatrix'
collect2: ld returned 1 exit status
make[1]: *** [maqview] Error 1
make[1]: Leaving directory `/usr/local/bin/maqview'
make: *** [all] Error 2

I found that you have to add "-lGLU" to get it to compile, change this line in the Makefile:
GLLIBS = -lGL -lglut -lm

to this:
GLLIBS = -lGL -lglut -lGLU -lm

[Ms@New]

Hi everyone,

I'm trying to install maqview, but I get the

I have the same problem
view_panel.o: In function `resetPickMatrixs':
/home/athena/Desktop/TMP/runHMAQ/maqview-0.2.1/view_panel.c:270: undefined reference to `gluPickMatrix'
collect2: ld returned 1 exit status
make[1]: *** [maqview] Error 1


changing it to GLLIBS = -lGL -lglut -lGLU -lm didn't help

any idea?

I'm new to all this, and I'm trying to install 0.2.1 version. and I'm using a 32 bit ubuntu

Thanks, I'm stuck!
----
later : Actually it did help!
I was just running everything from scratch eachtime
every time u run ./configure, it makes Makefile again,, so after running ./configure. change Makefile, and then run make, or I'm guessing change makefile.generic, so the new makefile would be the modified version