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  • eslamais
    Junior Member
    • Apr 2014
    • 6

    #1

    Getting the number of RNAseq in time series from NCBI

    cNA SOMEONE TELL ME WHAT THE sql CODE FOR THIS IS?

    I have tried any command.

    sql <- paste ("SELECT DISTINCT ",
    "gse.gse, gpl.technology ",
    "FROM ",
    "gse ",
    "JOIN ",
    "gpl ON gse.gpl = gpl.gpl ",
    "JOIN ",
    "gse_gsm ON gse.gse=gse_gsm.gse ",
    "JOIN ",
    "gds_subset ON gds.gds = gds_subset.gds ",
    "WHERE ",
    "gds_subset.type LIKE '%time%'", "AND ",
    "gpl.technology LIKE '%high-throughput sequencing%'",sep="")

    this:


    sql <- paste ("SELECT DISTINCT ",
    "gse.gse, gpl.technology ",
    "FROM ",
    "gse ",
    "JOIN ",
    "gpl ON gse.gpl = gpl.gpl ",
    "JOIN ",
    "gse_gsm ON gse.gse=gse_gsm.gse ",
    "WHERE ",
    "gpl.technology LIKE '%high-throughput sequencing%'",sep="")

    None of them works.

    I hearder that there is no GDS in RNAseq, but if I don't want to bring gds and focus on gse, I can not bring gds_subset.type which indicates time.

    Is there any way I can write a sql that brings the number of rnaseq in timeseries.

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