I ran some paired-end RNAseq alignments using STAR (default options) and then I ran samtools flagstat on the sorted bam files I always get
'0 + 0 duplicates'
All the other stats from flagstat appears consistent but I cant imagine with several million PE reads I get no duplicates.
Any Ideas
'0 + 0 duplicates'
All the other stats from flagstat appears consistent but I cant imagine with several million PE reads I get no duplicates.
Any Ideas
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