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Probably the best would be to see whether these tools exist in standalone version...Leave a comment:
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Retreaving results from online tool
Hi everyone!
I need to check my transcriptome sequences through many online tools. But of course all they have a program input limit. I want to analyse my data through tools http://www.camp.bicnirrh.res.in/predict/, http://bioinformatics.cs.ntou.edu.tw/ADAM/svm_tool.html and http://www.imtech.res.in/raghava/cel...ubmit_prot.php a
nd I want to do it through my console, because I have approximately 10.000.000 sequences. For this, I plan get a little number of sequences from my fasta file, input it in tool window, get a result, save it and repeat the algorithm. My knowledge in Perl and Python is very poor, I would be very greatful if somebody could give me an advice how to do this?
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The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...07-08-2024, 03:19 PM
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