how to visualize methylation level in different gene structure

[xyhuang]

Dear All,

I would like to know how to make the figures like below to show the methylation level at genes or TEs, and their 1-kb upstream and downstream regions at the sequence context of CG, CHG, and CHH.
Now I already have the whole genome methylome by BS-seq. Is there any tools to make the figures? or where can i find the sample script (in R or Linux) to do that?

Thanks!




![CG, CHG, and CHH methylation level at genes (A), TEs (B), and their 1-kb upstream and downstream regions][1]