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  • #1

    set VCF filter manually

    Hi,
    Anyone knows of a way to set VCF FILTER field to pass irrespective of existing value that exists (from VQSR or other sources).
    Tags: None
  • #2
    GATK https://www.broadinstitute.org/gatk/...Filtration.php with filterExpression

    or

    picard FilterVcf with javascript expression.

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