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  • Convert fastq/qual to sff file

    Hi, does anyone know any tools can convert fastq (or fasta+qual) file to sff files.

    I used to get 454 sequencing back as raw sff files. Now, they all give me fasta+qual file. I can easily make a fastq file from the two files. Is it possible to convert to sff file?

    ~Ben

  • #2
    See https://www.biostars.org/p/14594/

    Comment


    • #3
      Originally posted by GenoMax View Post
      That's so complicated. I don't understand.

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      • #4
        Originally posted by SDPA_Pet View Post
        That's so complicated. I don't understand.
        Not possible to do the conversion you are asking for because all information in SFF file is not captured by fastq/qual.

        Easiest would be to go back to your provider and ask them to give you SFF files in addition to fastq.

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