Announcement

Collapse
No announcement yet.

Freebayes installing problem

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Freebayes installing problem

    Hi! I wish to use Freebayes to investigate on my aligned reads about any vcs, snps and similar, so i proceeded to install this program (on ubuntu) with the code
    Code:
    git clone --recursive git://github.com/ekg/freebayes.git
    cd freebayes
    make
    but this is result

    Code:
    DETECTED_VERSION = v1.0.2-16-gd466dde
    CURRENT_VERSION  = v1.0.2-16-gd466dde
    cd ../bamtools && mkdir -p build && cd build && cmake .. && make
    /bin/sh: 1: cmake: not found
    Makefile:39: set for target instuction "../bamtools/lib/libbamtools.a" failed
    make[1]: *** [../bamtools/lib/libbamtools.a] Error 127
    make[1]: exit from directory "/home/martina/freebayes/src"
    Makefile:2: set for target instuction "all" failed
    make: *** [all] Error 2
    Do you have any idea for resolve my problem?

    Thank you

  • #2
    You need to install bamtools. Have you done that already?

    Comment


    • #3
      I've already installed bamtools!

      Comment


      • #4
        The installer is not able to find the library from bamtools in this relative path (../bamtools/lib/libbamtools.a) from where ever you are running the installation for freebayes.

        Comment


        • #5
          First error is no cmake.

          Install cmake first.

          Example as root :
          apt-get install cmake

          Comment


          • #6
            Originally posted by Richard Finney View Post
            First error is no cmake.

            Install cmake first.

            Example as root :
            apt-get install cmake
            Yikes. Missed that.

            Comment

            Working...
            X