Hi all!
I am usign TopHat2 and I get this error:
Beginning TopHat run (v2.0.10)
-----------------------------------------------
Checking for Bowtie
Bowtie 2 not found, checking for older version..
Bowtie version: 1.1.2.0
Checking for Samtools
Samtools version: 0.1.19.0
Checking for Bowtie index files (genome)..
Error: Could not find Bowtie index files (SaccFasta.idx.*.ebwt)
I have read in some forum that the problem is that TopHat didn't find bowtie2. Are there different in the results if I use the index-file of Bowtie1 or Bowtie2?
Thank you in advance
I am usign TopHat2 and I get this error:
Beginning TopHat run (v2.0.10)
-----------------------------------------------
Checking for Bowtie
Bowtie 2 not found, checking for older version..
Bowtie version: 1.1.2.0
Checking for Samtools
Samtools version: 0.1.19.0
Checking for Bowtie index files (genome)..
Error: Could not find Bowtie index files (SaccFasta.idx.*.ebwt)
I have read in some forum that the problem is that TopHat didn't find bowtie2. Are there different in the results if I use the index-file of Bowtie1 or Bowtie2?
Thank you in advance
Comment