Hi,
I am quite new to nextgen sequence analysis.
I used bowtie to align our colorspace data into the reference genome and it was quite fast. cufflink ran alright with my single .sam file, but the problem is I have 4 experimental replicates. Anyone has a suggestion as how I can combine these 4 cufflink outputs?
Is there a feature available in cufflink that can take more than one .sam files as technical replicates?
Many thanks
I am quite new to nextgen sequence analysis.
I used bowtie to align our colorspace data into the reference genome and it was quite fast. cufflink ran alright with my single .sam file, but the problem is I have 4 experimental replicates. Anyone has a suggestion as how I can combine these 4 cufflink outputs?
Is there a feature available in cufflink that can take more than one .sam files as technical replicates?
Many thanks
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