Hello everyone,
I got a VCF file with the following line :
My question is pretty simple but I didn't find any answer : what is a "high quality" ? How can I know which threshold was used ?
I've used samtools mpileup and then bcftools call with -m option.
I got a VCF file with the following line :
##FORMAT=<ID=DV,Number=1,Type=Integer,Description="Number of high-quality non-reference bases">
I've used samtools mpileup and then bcftools call with -m option.
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