mids in a mapping project

[litali]

I wanted to know if it is possible to analyze 454 data which was run in one lane with mids as a 454mapper project? I mean to separate the samples according to the mids and then find the mutations in each sample comparing to the reference.
Many thanks!

[flxlex]

Assuming you are using gsMApper/runMapping, unfortunately you will have to run the analysis separately for each MID. You cannot in one command have the program go through all the MIDs and do analysis on each set. So, if you have 12 MIDs, you have to run 12 analyses (on the same sff file), each time specifying a different MID.