i downloaded Mus_musculus.NCBIM37.59.gtf from ftp of ensembl, then i used transcripts.gtf, the result of cufflinks, as input to run cuffcompare
i got the following error message
Error: duplicate GFF ID 'ENSMUST00000127664' (or exons too far apart)!
what's wrong with the process? i use cufflinks with version 0.8.3
cuffcompare -r Mus_musculus.NCBIM37.59.gtf transcripts.gtf
Error: duplicate GFF ID 'ENSMUST00000127664' (or exons too far apart)!
what's wrong with the process? i use cufflinks with version 0.8.3
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