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Hi all!
I have a problem with GO annotation of my BLAST results. So far I used Blast2GO, but for several reasons I am a bit unsatisfied with the programme.
In addition I need a good export function because I want to further analyse the data in MS Excel.
Can anyone name a sufficient programme which
- annotates GO terms for .xml files or swissprot accesion IDs (BLAST mustn't be done there!)
- possibility to only export level 2 GO terms
- possibility to export GO terms in tab-delimited form or equal for further analysis in Excel (information about category MF, BP, CC should be maintained!)
Thanks to everyone in advance!
I have a problem with GO annotation of my BLAST results. So far I used Blast2GO, but for several reasons I am a bit unsatisfied with the programme.
In addition I need a good export function because I want to further analyse the data in MS Excel.
Can anyone name a sufficient programme which
- annotates GO terms for .xml files or swissprot accesion IDs (BLAST mustn't be done there!)
- possibility to only export level 2 GO terms
- possibility to export GO terms in tab-delimited form or equal for further analysis in Excel (information about category MF, BP, CC should be maintained!)
Thanks to everyone in advance!