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Hi,
I want to annotate my .vcf file based on ExAC database.
I'm ONLY interested in AC_EAS tags from the database
I do:
java -jar SnpSift.jar annotate -info AC_EAS ExAC_db.vcf.gz my.vcf.gz > out.vcf
however only the first variant in my.vcf.gz is annotated and the tag AC_EAS=0 is addad.
All other positions remain empty, without annotations. These positions should be annotated since they exist both in my.vcf.gz and in ExAC_db.vcf.gz
Did you have similar problem?
Thx
I want to annotate my .vcf file based on ExAC database.
I'm ONLY interested in AC_EAS tags from the database
I do:
java -jar SnpSift.jar annotate -info AC_EAS ExAC_db.vcf.gz my.vcf.gz > out.vcf
however only the first variant in my.vcf.gz is annotated and the tag AC_EAS=0 is addad.
All other positions remain empty, without annotations. These positions should be annotated since they exist both in my.vcf.gz and in ExAC_db.vcf.gz
Did you have similar problem?
Thx