OrthoMCL Pairs no output

[asapp]

Hello,

I'm trying to run the OrthoMCL pipeline and haven't had any issue until the OrthoMCL Pairs step. I have a SimilarSequences table in my MySQL database, a config file that correctly specifies everything, and I've checked the SimilarSequences table to make sure all the data is present as it should be. However, when I run the program with: orthomclPairs orthomcl.config pairs.log cleanup=only, the program 'finishes' immediately with the log file saying 'Done' and nothing else (no data in the ortholog table, etc). Any idea how I could have gone wrong?

Thanks!

[asapp]

Question resolved

[Sin Lee]

Hi, asapp

I met the same problem that orthomclPairs finishes immediately with no output or error information. I'll appreciate it if you can share your solutions.

Thanks,
Sin Lee