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  • JohnK
    Senior Member
    • Feb 2010
    • 106
    #1

    mouse rRNA

    Hey,

    I need to grab mouse rRNA sequences in fasta format. Any ideas of a good DB? Trying to find some and found fRNAdb, but these don't appear to be divided by species. Perhaps it doesn't matter? Thanks for the help!
    Tags: None
    • ECO
      --Site Admin--
      • Oct 2007
      • 1360
      #2
      Seen this?

      Network maintenance
      http://www.arb-silva.de/

        Comment

        • JohnK
          Senior Member
          • Feb 2010
          • 106
          #3
          No, I haven't. Thanks, ECO!

            Comment

            • ECO
              --Site Admin--
              • Oct 2007
              • 1360
              #4
              I really like that site. It was essential in the ribosomal RNA work I did in the past.

                Comment

                • JohnK
                  Senior Member
                  • Feb 2010
                  • 106
                  #5
                  I'm currently getting the .tgz files. Are there any .fasta files in there?

                    Comment

                    • ECO
                      --Site Admin--
                      • Oct 2007
                      • 1360
                      #6
                      Not sure. I was searching for specific rRNAs which you can put in a "cart" and download en masse.

                        Comment

                        • baritone
                          Junior Member
                          • Jun 2015
                          • 5
                          #7
                          There is an option to download fasta files.

                            Comment

                            • GenoMax
                              Senior Member
                              • Feb 2008
                              • 7142
                              #8
                              A new resource for mouse rRNA: http://rnacentral.org/rna/URS00000F9D45/10090

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