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  • How to get some hands on experience with NGS data analysis?

    Hi, I register a coursera NGS data analysis course online. Finished most of the course, like Pyhthon and Unix command line.

    I want to know how to get some hands on experience with NGS data analysis? I know I can download data from NCBI. Is there any online project I can do?

    For example, when I worked on python I found http://codingbat.com/python to practice my coding skill?


    Thanks

  • #2
    The Rosalind project (see here) is a good place to start.

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    • #3
      The sequencing companies have example datasets. For Illumina, make a BaseSpace account and it will offer you some of their datasets.
      Microbial ecologist, running a sequencing core. I have lots of strong opinions on how to survey communities, pretty sure some are even correct.

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      • #4
        That's very helpful.

        Originally posted by HESmith View Post
        The Rosalind project (see here) is a good place to start.

        Comment

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