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Hi all,
I wondered if any of you can tell me how to use the apparent motif2Logo.pl function from Homer on .motif files? Apparently this function exists but I can't find anywhere how to construct the command etc.
Background is, when the motif analysis was run with Homer on our ChIP-seq data, not all the dependencies were installed to automatically generate the logos at the end (eg Weblogo, ghostscript etc) and now we'd like to go back and generate them with the .motif files we already have. I'd really rather not repeat the motif finding as it took a very long time.
I wondered if any of you can tell me how to use the apparent motif2Logo.pl function from Homer on .motif files? Apparently this function exists but I can't find anywhere how to construct the command etc.
Background is, when the motif analysis was run with Homer on our ChIP-seq data, not all the dependencies were installed to automatically generate the logos at the end (eg Weblogo, ghostscript etc) and now we'd like to go back and generate them with the .motif files we already have. I'd really rather not repeat the motif finding as it took a very long time.