Hello everyone,
I am now working with velvet denove assemly of my short reads data. The result directory contains the following files (contigs.fa Graph2 LastGraph Log PreGraph Roadmaps Sequences stats.txt velvet_asm.afg). I want to get the depth of coverage of each site on contig sequences contained in "contig.fa". Is the coverage information contained in "velvet_asm.afg" file?
Any suggestion will be very appreciate!
I am now working with velvet denove assemly of my short reads data. The result directory contains the following files (contigs.fa Graph2 LastGraph Log PreGraph Roadmaps Sequences stats.txt velvet_asm.afg). I want to get the depth of coverage of each site on contig sequences contained in "contig.fa". Is the coverage information contained in "velvet_asm.afg" file?
Any suggestion will be very appreciate!
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